MetaCoAG: binning metagenomic contigs via composition, coverage and assembly graphs

DOI10.1007/978-3-031-04749-7_5zbMath1496.92071OpenAlexW4285125166MaRDI QIDQ2170126

Vijini Mallawaarachchi, Yu Lin

Publication date: 30 August 2022

Full work available at URL: https://doi.org/10.1007/978-3-031-04749-7_5

zbMATH Keywords

binningmetagenomicsassembly graphscontigs

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

MetaCoAG

Uses Software

• SPAdes
• IDBA-UD
• FragGeneScan
• MetaProb
• CLARK
• MEGAHIT
• Minimap2
• Kraken
• GTDB-Tk
• CheckM
• MetaWRAP
• METAMVGL
• SolidBin
• metaSPAdes
• GraphBin
• metaFlye
• AMBER
• Centrifuge
• MaxBin
• MetaBAT
• oblr
• BMC3C

Cites Work

• GTDB-Tk
• CheckM
• MetaWRAP
• METAMVGL
• SolidBin
• metaSPAdes
• GraphBin
• metaFlye
• An algorithm to solve them ×n assignment problem in expected timeO(mn logn)
• An Eulerian path approach to DNA fragment assembly
• BMC3C

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