Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach

DOI10.1007/s00285-020-01522-wzbMath1471.65085OpenAlexW3044040797WikidataQ97646800 ScholiaQ97646800MaRDI QIDQ2192666

Leonard Schmiester, Jan Hasenauer, Daniel Weindl

Publication date: 17 August 2020

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-020-01522-w

zbMATH Keywords

parameter estimationnumerical optimizationsystems biologyqualitative datadynamical modeling

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Numerical solution of inverse problems involving ordinary differential equations (65L09)

Related Items (1)

pyPESTO

Uses Software

• SUNDIALS
• SciPy
• GenSSI
• COPASI
• AMIGO
• Data2Dynamics
• PESTO
• PyBioNetFit
• PEtab

Cites Work

• Unnamed Item
• SUNDIALS
• The analysis of proximities: Multidimensional scaling with an unknown distance function: I, II
• Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability

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