Distance to the stochastic part of phylogenetic varieties
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Publication:2229740
DOI10.1016/j.jsc.2020.09.003zbMath1468.92045arXiv1912.02138OpenAlexW2993032386MaRDI QIDQ2229740
Jesús Fernández-Sánchez, Marina Garrote-López, Marta Casanellas
Publication date: 18 February 2021
Published in: Journal of Symbolic Computation (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1912.02138
Euclidean distance degreegroup-based modelsphylogenetic varietyquartet topologylong-branch attractionsemi-algebraic phylogenetics
Problems related to evolution (92D15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)
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- An algebraic analysis of the two state Markov model on tripod trees
- Geometry of the Kimura 3-parameter model
- On the ideals of equivariant tree models
- A finite algorithm for finding the projection of a point onto the canonical simplex of \({\mathbb R}^ n\)
- The Magma algebra system. I: The user language
- Phylogenetic invariants for the general Markov model of sequence mutation
- Maximum likelihood estimation of symmetric group-based models via numerical algebraic geometry
- Implicit inequality constraints in a binary tree model
- Low degree equations for phylogenetic group-based models
- Interfacing with PHCpack
- Invariants of some probability models used in phylogenetic inference
- Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites
- Mathematical Models in Biology
- Algorithm 795
- Estimation of evolutionary distances between homologous nucleotide sequences.
