Estimation of cell lineage trees by maximum-likelihood phylogenetics

DOI10.1214/20-AOAS1400zbMath1475.62255arXiv1904.00117OpenAlexW3138518508MaRDI QIDQ2233179

Aaron McKenna, Frederick A. IV Matsen, Amy D. Willis, William S. III Dewitt, Jean Feng, Noah Robin Simon

Publication date: 14 October 2021

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1904.00117

zbMATH Keywords

regularizationmaximum likelihood estimatorphylogeneticstree reconstructioncell lineage tracing

Mathematics Subject Classification ID

Asymptotic properties of parametric estimators (62F12) Applications of statistics to biology and medical sciences; meta analysis (62P10) Cell biology (92C37)

Uses Software

• ElemStatLearn
• TreeFix

Cites Work

• Markov chain aggregation and its applications to combinatorial reaction networks
• Geometry of the space of phylogenetic trees
• Consistency and convergence rate of phylogenetic inference via regularization
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