Statistical analysis of next generation sequencing data

DOI10.1007/978-3-319-07212-8zbMath1296.92001OpenAlexW645554778MaRDI QIDQ2250275

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Publication date: 4 July 2014

Published in: Frontiers in Probability and the Statistical Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-07212-8

zbMATH Keywords

classificationmappinghierarchical clusteringdifferential expressionmodel-based clusteringnormalizationcluster analysissupport vector machinesBayesian inferencerare variantsfunctional principal component analysisnext generation sequencinghierarchical Bayesian modelsedgeRquantitative trait lociPoisson distributionsempirical Bayesian approachintegrated nested Laplace approximationhybrid clusteringChIPseqcopy number changeDEGseqgene expression levelgene expression measurementgene expression summarizationgenome matchinggenotype callingisoform analysismetagenomic datanegative binomial testquasi-likelihood testreplicate analysisRNAseqscaling normalizationspike-in normalization

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01) Research exposition (monographs, survey articles) pertaining to biology (92-02)

Related Items (5)

A Projection Pursuit Forest Algorithm for Supervised Classification ⋮ Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes ⋮ Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis ⋮ BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data ⋮ Fully Bayesian analysis of allele-specific RNA-seq data

Uses Software

• R
• Bioconductor
• edgeR
• DEGseq
• R-INLA
• affy
• BaySeq
• DEseq
• EDAseq
• RUVseq

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