An efficient algorithm to identify DNA motifs

DOI10.1007/s11786-013-0165-6zbMath1319.68261OpenAlexW2001486240MaRDI QIDQ2254087

Mostafa M. Abbass, Hazem M. Bahig

Publication date: 4 February 2015

Published in: Mathematics in Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11786-013-0165-6

zbMATH Keywords

pattern matchingexact algorithmsDNA motifstranscription factor binding sitesplanted \((l, d)\)-motif

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Algorithms on strings (68W32)

Uses Software

• TRANSFAC
• PMS5
• TEIRESIAS

Cites Work

• Space and Time Efficient Algorithms for Planted Motif Search
• Computing and Combinatorics

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