RNA bioinformatics
DOI10.1007/978-1-4939-2291-8zbMath1318.92003OpenAlexW4234444708WikidataQ60325210 ScholiaQ60325210MaRDI QIDQ2259130
No author found.
Publication date: 27 February 2015
Published in: Methods in Molecular Biology (Search for Journal in Brave)
Full work available at URL: http://www.springer.com/us/book/9781493922901
multiple alignmentsequence alignmentalternative splicingassemblymiRNARNA secondary structureRNA-RNA interactionmotif discovery3D structureRNAseqantagomirartificial RNA moleculeASPicDBAStalavistae-DNA meta-barcodingediting siteExpEditmetatranscriptomemiRNA spongeNGS-Trexpost-transcriptional RNA editingRFAMRIPseq, ViennaRNA web serviceRNA tertiary structureRNAseq workflowUTR regulatory element
Collections of articles of miscellaneous specific interest (00B15) Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10) Genetics and epigenetics (92D10) Proceedings, conferences, collections, etc. pertaining to biology (92-06) General biology and biomathematics (92B05)
Uses Software
- R
- STAR
- Bioconductor
- Rfam
- edgeR
- RNAshapes
- onechannelgui
- BaySeq
- ViennaRNA
- EMBOSS
- ClustalW
- Mfold
- KEGG
- Clustal X
- VARNA
- CompaRNA
- Galaxy
- FastQC
- Infernal
- Oases
- SOAPdenovo
- RNAmute
- RNAexinv
- RNAfbinv
- RNAalifold
- CONTRAfold
- Rnaz
- CentroidAlign
- RactIP
- COFOLD
- PicXAA-R
- CENTROIDFOLD
- IPknot
- DAFS
- PETfold
- PETcofold
- PPfold
- RNAG
- R-Coffee
- RNAspa
- RNASTAR
- RNAstructure
- PseudoViewer3
- jViz.Rna
- Assemble
- R-CHIE
- R4RNA
- RILogo
- R2R
- RNA2D3D
- ModeRNA
- RNAplex
- RSeQC
- SeqMap
- SHRiMP
- ASPIC
- PIntron
- Exogean
- REDItools
- NGS-Trex
- SortMeRNA
- ARB
- TagCleaner
- EMIRGE
- Minimus
- TopHat
- RAST
- FragGeneScan
- RSEM
- EBSeq
- RIPSeeker
- PARalyzer
- DARNED
- ExpEdit
- NGS QC Toolkit
- PatSearch
- WAR
- SCOOP
- AstexViewer
- BioMart
- ASPicDB
- PolyA_DB
- BaCelLo
- SPEPlip
- PredGPI
- ASTALAVISTA
- OptiRNAi
- OligoWalk
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