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Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret - MaRDI portal

Bioinformatics and phylogenetics. Seminal contributions of Bernard Moret

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Publication:2312623

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DOI10.1007/978-3-030-10837-3zbMath1429.92003OpenAlexW4236486124MaRDI QIDQ2312623

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Publication date: 17 July 2019

Published in: Computational Biology (Search for Journal in Brave)

Full work available at URL: https://rd.springer.com/content/pdf/10.1007%2F978-3-030-10837-3.pdf

zbMATH Keywords

Steiner tree problem population genetics integer linear programming genome rearrangement maximum independent set maximum clique penalised likelihood phylogenetics functional genomics multiple gene copies breakpoint distance comparative genomics regular networks tree space gene family evolution phylogenetic signal Farris transform ancestral genome reconstruction set of trees application of travelling salesman problem Bayesian inference of phylogenetic networks binary gene tree binary species tree cancer phylogenetics cluster networks deconvolutional phylogenies divide-and-conquer tree estimation evolutionary rate change high density subgraphs high-performance phylogenetic inference likelihood calculation maximum likelihood tree inference modal similarity of orthologs multi-copy model multiple genomes non-binary gene tree non-binary species tree non-parametric rate smoothing (NPRS)optimisation of branch lengths parametrisation of network topology phylo-genomics phylogenetic invariant models pruning inference reticulation visible phylogenetic networks rooted phylogenetic networks rooted splits scalability of super-tree methods sequence-length requirements single gene copies super-tree taxonomic super-tree construction tree estimation

Mathematics Subject Classification ID

Problems related to evolution (92D15) Integer programming (90C10) Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Systems biology, networks (92C42)

Related Items (6)

Asymptotic enumeration and distributional properties of galled networks ⋮ A tutorial on the balanced minimum evolution problem ⋮ Counting and enumerating galled networks ⋮ Counting and enumerating tree-child networks and their subclasses ⋮ On the approximability of the fixed-tree balanced minimum evolution problem ⋮ MUL-tree pruning for consistency and optimal reconciliation -- complexity and algorithms

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