Stochastic simulation of biochemical systems: in memory of Dan T. Gillespie's contributions

DOI10.1007/s11538-019-00633-wzbMath1476.00108OpenAlexW2955370423WikidataQ91538509 ScholiaQ91538509MaRDI QIDQ2325557

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Publication date: 26 September 2019

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-019-00633-w

Mathematics Subject Classification ID

Proceedings, conferences, collections, etc. pertaining to probability theory (60-06) Collections of articles of miscellaneous specific interest (00B15) Proceedings, conferences, collections, etc. pertaining to numerical analysis (65-06) Festschriften (00B30) Proceedings, conferences, collections, etc. pertaining to biology (92-06)

Cites Work

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• Stochastic simulation of pattern formation in growing tissue: a multilevel approach
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• A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks
• \(S\)-leaping: an adaptive, accelerated stochastic simulation algorithm, bridging \(\tau\)-leaping and \(R\)-leaping
• Data-driven method for efficient characterization of rare event probabilities in biochemical systems
• Sensitivity analysis for multiscale stochastic reaction networks using hybrid approximations
• Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations