Describing the local structure of sequence graphs

DOI10.1007/978-3-319-58163-7_2zbMath1367.92078OpenAlexW2609133828MaRDI QIDQ2364898

Jordan M. Eizenga, Yohei Rosen, Benedict Paten

Publication date: 25 July 2017

Full work available at URL: https://doi.org/10.1101/125542

zbMATH Keywords

genetic variantssequence graphs

Mathematics Subject Classification ID

Applications of graph theory (05C90) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

An Average-Case Sublinear Exact Li and Stephens Forward Algorithm

Uses Software

• VCFtools
• Velvet
• GitHub
• sequenceTubeMap

Cites Work

• Linear-time superbubble identification algorithm for genome assembly
• Superbubbles, ultrabubbles and cacti
• Topology of series-parallel networks
• The Recognition of Series Parallel Digraphs

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