Maximum likelihood estimates of pairwise rearrangement distances

DOI10.1016/j.jtbi.2017.04.015zbMath1370.92111arXiv1602.03962OpenAlexW2962876490WikidataQ30401299 ScholiaQ30401299MaRDI QIDQ2404039

Attila Egri-Nagy, Stuart Serdoz, Mark M. Tanaka, Barbara R. Holland, Peter D. Jarvis, Jeremy G. Sumner, Andrew R. Francis

Publication date: 12 September 2017

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1602.03962

zbMATH Keywords

maximum likelihoodinversionphylogenygroup theorygenome rearrangementcosetalgebraic biology

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Taxonomy, cladistics, statistics in mathematical biology (92B10)

Related Items (8)

Position and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomics ⋮ A new algebraic approach to genome rearrangement models ⋮ Comparing evolutionary distances via adaptive distance functions ⋮ A mean first passage time genome rearrangement distance ⋮ Rearrangement events on circular genomes ⋮ An algebraic model for inversion and deletion in bacterial genome rearrangement ⋮ A representation-theoretic approach to the calculation of evolutionary distance in bacteria ⋮ Maximum likelihood estimates of rearrangement distance: implementing a representation-theoretic approach

Uses Software

• BioGAP

Cites Work

• An algebraic view of bacterial genome evolution
• The performance of neighbor-joining methods of phylogenetic reconstruction
• A note on the metric properties of trees
• Estimating the expected reversal distance after a fixed number of reversals
• Group-theoretic models of the inversion process in bacterial genomes
• Expected number of inversions after a sequence of random adjacent transpositions -- an exact expression
• Bacterial Genomics and Computational Group Theory: The BioGAP Package for GAP
• Estimating true evolutionary distances between genomes
• A representation-theoretic approach to the calculation of evolutionary distance in bacteria
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item

This page was built for publication: Maximum likelihood estimates of pairwise rearrangement distances