Fast approximation of frequent \(k\)-mers and applications to metagenomics

DOI10.1007/978-3-030-17083-7_13zbMath1412.92209arXiv1902.10168OpenAlexW2919778214MaRDI QIDQ2415270

Fabio Vandin, Cinzia Pizzi, Leonardo Pellegrina

Publication date: 21 May 2019

Full work available at URL: https://arxiv.org/abs/1902.10168

zbMATH Keywords

VC dimensionmetagenomicssampling algorithm\(k\)-mer analysis

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

SAKEIMA

Uses Software

• Quake
• Velvet
• KMC
• Turtle
• MetaProb
• KmerStream
• ntCard
• Squeakr
• Kmerlight
• Kraken
• RNA-Skim

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