\textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm

DOI10.1007/978-3-030-17083-7_14zbMath1412.92105OpenAlexW2949600294MaRDI QIDQ2415272

Kristoffer Sahlin, Paul Medvedev

Publication date: 21 May 2019

Full work available at URL: https://doi.org/10.1007/978-3-030-17083-7_14

Mathematics Subject Classification ID

Nonnumerical algorithms (68W05) Biochemistry, molecular biology (92C40)

Related Items (2)

Representation of $$k$$-mer Sets Using Spectrum-Preserving String Sets ⋮ isONclust

Uses Software

• Cd-hit
• GitHub
• MeShClust
• DNACLUST
• MMseqs2
• Starcode
• EasyCluster2
• SimLoRD
• parasail
• Minimap2
• LSC
• Cogent
• Grouper
• Corset
• Mash
• SlideSort
• Rainbow
• d2_cluster

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