Extraction of high quality \(k\)-words for alignment-free sequence comparison
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Publication:2415644
DOI10.1016/j.jtbi.2014.05.016zbMath1412.92216OpenAlexW2025089689WikidataQ51084290 ScholiaQ51084290MaRDI QIDQ2415644
Susan Bedingfield, Upuli Gunasinghe, Damminda Alahakoon
Publication date: 23 May 2019
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.05.016
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- Alignment free comparison: similarity distribution between the DNA primary sequences based on the shortest absent word
- WSE, a new sequence distance measure based on word frequencies
- Comparison of phylogenetic trees
- The Burrows-Wheeler similarity distribution between biological sequences based on Burrows-Wheeler transform
- A novel statistical measure for sequence comparison on the basis of \(k\)-word counts
- New powerful statistics for alignment-free sequence comparison under a pattern transfer model
- Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
- Approximate word matches between two random sequences
- Characterizing the D2 Statistic: Word Matches in Biological Sequences
- Statistical Measures of DNA Sequence Dissimilarity under Markov Chain Models of Base Composition
- A measure of the similarity of sets of sequences not requiring sequence alignment.
- Biological Sequence Analysis
- Algorithms on Strings, Trees and Sequences
- A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
- Distributional regimes for the number of k -word matches between two random sequences
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