A measure of DNA sequence similarity by Fourier transform with applications on hierarchical clustering

DOI10.1016/j.jtbi.2014.05.043zbMath1412.92252OpenAlexW2134065368WikidataQ42213516 ScholiaQ42213516MaRDI QIDQ2415679

Yanyan Li

Publication date: 23 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.05.043

zbMATH Keywords

phylogenetic treesgenomeeven scalingsimilarity distance

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Related Items (4)

A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding ⋮ Use of image texture analysis to find DNA sequence similarities ⋮ Periodic power spectrum with applications in detection of latent periodicities in DNA sequences ⋮ An improved model for whole genome phylogenetic analysis by Fourier transform

Uses Software

• MEGA

Cites Work

• Unnamed Item
• Some biological sequence metrics
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• Numerical characteristics of word frequencies and their application to dissimilarity measure for sequence comparison
• An Overview of Sequence Comparison: Time Warps, String Edits, and Macromolecules
• A measure of the similarity of sets of sequences not requiring sequence alignment.
• A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
• Large-Scale Multiple Sequence Alignment and Phylogeny Estimation

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