Toward the human genotope

DOI10.1007/s11538-007-9244-7zbMath1245.92019arXivq-bio/0611032OpenAlexW2142928446WikidataQ40173471 ScholiaQ40173471MaRDI QIDQ2426386

Peter Huggins, Lior Pachter, Bernd Sturmfels

Publication date: 22 April 2008

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/q-bio/0611032

zbMATH Keywords

polytopessingle nucleotide polymorphismENCODE projecthuman variation

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Related Items (4)

From typical sequences to typical genotypes ⋮ Parametric analysis of alignment and phylogenetic uncertainty ⋮ MINIMAL DECOMPOSITION OF BINARY FORMS WITH RESPECT TO TANGENTIAL PROJECTIONS ⋮ Toward Quantifying Vertex Similarity in Networks

Uses Software

• polymake
• SeDuMi
• STRUCTURE
• Eigenstrat

Cites Work

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• Analysis of symbolic sequences using the Jensen-Shannon divergence
• Archetypal Analysis
• Using SeDuMi 1.02, A Matlab toolbox for optimization over symmetric cones
• The Making and Testing of Geographic Gene-Frequency Maps

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