Combinatorics of locally optimal RNA secondary structures

DOI10.1007/s00285-012-0631-9zbMath1288.05018arXiv1112.4610OpenAlexW2084897012WikidataQ47930941 ScholiaQ47930941MaRDI QIDQ2436594

Éric Fusy, Peter Clote

Publication date: 25 February 2014

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1112.4610

Mathematics Subject Classification ID

Asymptotic enumeration (05A16) General biology and biomathematics (92B05) Statistical thermodynamics (82B30)

Related Items (3)

A semi-bijective algorithm for saturated extended 2-regular simple stacks ⋮ Asymptotic number of hairpins of saturated RNA secondary structures ⋮ RNA folding kinetics using Monte Carlo and Gillespie algorithms

Uses Software

• RNAshapes
• UNAFold
• Mfold
• Pfold

Cites Work

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• Combinatorics of RNA-RNA interaction
• On the page number of RNA secondary structures with pseudoknots
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• On some new sequences generalizing the Catalan and Motzkin numbers
• Combinatorics of RNA secondary structures
• The Euler characteristic of the moduli space of curves
• On an asymptotic method in enumeration
• Central and local limit theorems applied to asymptotic enumeration
• Impact of the Energy Model on the Complexity of RNA Folding with Pseudoknots
• Asymptotic Study of Subcritical Graph Classes
• Singularity Analysis of Generating Functions
• Twenty Combinatorial Examples of Asymptotics Derived from Multivariate Generating Functions

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