Fitting birth-death processes to panel data with applications to bacterial DNA fingerprinting

DOI10.1214/13-AOAS673zbMath1283.92027arXiv1009.0893WikidataQ31033872 ScholiaQ31033872MaRDI QIDQ2441864

Charles R. Doss, Marc A. Suchard, Ian Holmes, Vladimir N. Minin, Midori Kato-Maeda

Publication date: 28 March 2014

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1009.0893

zbMATH Keywords

EM algorithmtuberculosismissing datatransposable elementsIS6110

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of branching processes (60J85) Biochemistry, molecular biology (92C40) Medical epidemiology (92C60) Computational methods for problems pertaining to biology (92-08) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (7)

Some periodic type solutions for stochastic reaction-diffusion equation with cubic nonlinearities ⋮ Birth/birth-death processes and their computable transition probabilities with biological applications ⋮ Fitting birth-death processes to panel data with applications to bacterial DNA fingerprinting ⋮ The solutions with recurrence property for stochastic linearly coupled complex cubic-quintic Ginzburg–Landau equations ⋮ Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements ⋮ Estimation for General Birth-Death Processes ⋮ Stochastic systems of diffusion equations with polynomial reaction terms

Uses Software

• R
• msm

Cites Work

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