Neighborhood functions and hill-climbing strategies dedicated to the generalized ungapped local multiple alignment

DOI10.1016/J.EJOR.2005.10.076zbMath1179.92023OpenAlexW2053235452WikidataQ60574119 ScholiaQ60574119MaRDI QIDQ2464211

David Hernandez, Robin Gras, Ron Appel

Publication date: 10 December 2007

Published in: European Journal of Operational Research (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.ejor.2005.10.076

zbMATH Keywords

motif discovery

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Combinatorial optimization (90C27) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Uses Software

• BioProspector
• Nomad
• PROSITE
• Pfam

Cites Work

• MoDEL: an efficient strategy for ungapped local multiple alignment

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