Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle

DOI10.1007/S10898-007-9273-7zbMath1140.68371OpenAlexW2120713344MaRDI QIDQ2481377

Layne T. Watson, John J. Tyson, Katherine C. Chen, Nicholas A. Allen, Clifford A. Shaffer, Thomas D. Panning

Publication date: 9 April 2008

Published in: Journal of Global Optimization (Search for Journal in Brave)

Full work available at URL: http://eprints.cs.vt.edu/archive/00000730/01/JGO06.pdf

zbMATH Keywords

Computational biologyMADSDirect searchDIviding RECTangles algorithmMesh Adaptive Direct Search algorithm

Mathematics Subject Classification ID

Searching and sorting (68P10) Nonnumerical algorithms (68W05)

Related Items (8)

Exploiting derivative-free local searches in DIRECT-type algorithms for global optimization ⋮ On \texttt{MATLAB} experience in accelerating \texttt{DIRECT-GLce} algorithm for constrained global optimization through dynamic data structures and parallelization ⋮ Lipschitz gradients for global optimization in a one-point-based partitioning scheme ⋮ A modified DIviding RECTangles algorithm for a problem in astrophysics ⋮ Design and implementation of a massively parallel version of DIRECT ⋮ A modified uniformization method for the solution of the chemical master equation ⋮ A univariate global search working with a set of Lipschitz constants for the first derivative ⋮ RADIAL BASIS FUNCTION COLLOCATION FOR THE CHEMICAL MASTER EQUATION

Uses Software

• Unnamed Item

Cites Work

• Lipschitzian optimization without the Lipschitz constant
• Dynamic data structures for a direct search algorithm
• Mesh Adaptive Direct Search Algorithms for Constrained Optimization
• Frame based methods for unconstrained optimization

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