A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences

DOI10.1016/j.mbs.2005.11.003zbMath1086.92039OpenAlexW2147536240WikidataQ51955931 ScholiaQ51955931MaRDI QIDQ2489578

Michelle R. Lacey, Joseph T. Chang

Publication date: 28 April 2006

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2005.11.003

zbMATH Keywords

Jukes-Cantor modelasymptotic stability of neighbor-joining algorithms

Mathematics Subject Classification ID

Problems related to evolution (92D15) Mathematical programming (90C99)

Related Items (9)

Circular Networks from Distorted Metrics ⋮ Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges ⋮ Expanding the class of global objective functions for dissimilarity-based hierarchical clustering ⋮ Alignment-free phylogenetic reconstruction: Sample complexity via a branching process analysis ⋮ Phase transition in the sample complexity of likelihood-based phylogeny inference ⋮ Network delay inference from additive metrics ⋮ Logarithmic bounds on the posterior divergence time of two sequences ⋮ Large-Scale Multiple Sequence Alignment and Phylogeny Estimation ⋮ Spectral Neighbor Joining for Reconstruction of Latent Tree Models

Cites Work

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• The performance of neighbor-joining methods of phylogenetic reconstruction
• Taxonomy with confidence
• Biological Sequence Analysis
• A few logs suffice to build (almost) all trees (I)
• Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining
• The Performance of Phylogenetic Methods on Trees of Bounded Diameter
• Some Concepts of Dependence

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