Coding sequence density estimation via topological pressure

DOI10.1007/S00285-014-0754-2zbMath1309.92060arXiv1109.5999OpenAlexW2137641446WikidataQ51121450 ScholiaQ51121450MaRDI QIDQ2512920

David Koslicki, Daniel J. Thompson

Publication date: 2 February 2015

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1109.5999

zbMATH Keywords

topological pressureDNA sequence analysiscoding sequence density estimation

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Protein sequences, DNA sequences (92D20) Thermodynamic formalism, variational principles, equilibrium states for dynamical systems (37D35) Computational methods for problems pertaining to biology (92-08)

Related Items (1)

Dynamical intricacy and average sample complexity

Uses Software

• Matlab
• RNAcode
• PhyloCSF

Cites Work

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• Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length
• INFEASIBILITY OF QUANTUM CRYPTOGRAPHY WITHOUT EAVESDROPPING CHECK
• Cross-Validation of Regression Models
• PHASE TRANSITION IN THE GENOME EVOLUTION FAVORS NONRANDOM DISTRIBUTION OF GENES ON CHROMOSOMES
• Biological Sequence Analysis
• A Simplex Method for Function Minimization
• Equilibrium states and the ergodic theory of Anosov diffeomorphisms

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