Investigation of the Bernoulli model for RNA secondary structures

DOI10.1016/j.bulm.2003.08.015zbMath1334.92314OpenAlexW2013340478WikidataQ80418100 ScholiaQ80418100MaRDI QIDQ253601

Markus E. Nebel

Publication date: 8 March 2016

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.bulm.2003.08.015

zbMATH Keywords

algorithmic predictionBernoulli modelbulgeshairpinsrandom secondary structures

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (6)

Large deviations for random trees and the branching of RNA secondary structures ⋮ RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup ⋮ Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov--Jacobson energy model ⋮ Asymptotic number of hairpins of saturated RNA secondary structures ⋮ Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding ⋮ Efficient sampling of RNA secondary structures from the Boltzmann ensemble of low-energy

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