Scalable genomics with \texttt{R} and bioconductor

DOI10.1214/14-STS476zbMath1332.62009arXiv1409.2864OpenAlexW1981180611WikidataQ29577100 ScholiaQ29577100MaRDI QIDQ257684

Martin Morgan, Michael Lawrence

Publication date: 17 March 2016

Published in: Statistical Science (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1409.2864

zbMATH Keywords

big datagenomics\texttt{R}Bioconductorbiology

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to statistics (62-04) Graphical methods in statistics (62A09) Software, source code, etc. for problems pertaining to biology (92-04)

Uses Software

• GGobi
• R
• Bioconductor
• SoDA
• foreach
• plyr
• Biostrings
• plumbr
• VCFtools
• Samtools
• pbdR
• biovizBase
• BatchJobs
• BatchExperiments
• GenomicRanges
• BigWig
• GenomicAlignments

Cites Work

• The plumbing of interactive graphics
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