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On the readability of overlap digraphs

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Publication:266924
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DOI10.1016/j.dam.2015.12.009zbMath1333.05134OpenAlexW2962911156MaRDI QIDQ266924

Sofya Raskhodnikova, Rayan Chikhi, Paul Medvedev, Martin Milanič

Publication date: 7 April 2016

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2015.12.009

zbMATH Keywords

bioinformaticsgraph parameteroverlap graphreadabilitystringology


Mathematics Subject Classification ID

Applications of graph theory (05C90) Directed graphs (digraphs), tournaments (05C20)


Related Items

Classification of de Bruijn-based labeled digraphs, Bipartite graphs of small readability



Cites Work

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  • Recognition of overlap graphs
  • A greedy approximation algorithm for constructing shortest common superstrings
  • On the recognition of de Bruijn graphs and their induced subgraphs
  • Recognizing DNA graphs is difficult.
  • On some properties of DNA graphs
  • Embedding on alphabet overlap digraphs
  • Characterizations for some types of DNA graphs
  • \boldmath A $2\frac12$-Approximation Algorithm for Shortest Superstring
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