Comparison of cell state models derived from single-cell RNA sequencing data: graph versus multi-dimensional space

DOI10.3934/MBE.2022395OpenAlexW4284974281MaRDI QIDQ2688431

Russell C. Rockne, Heyrim Cho, Ya-Huei Kuo

Publication date: 3 March 2023

Published in: Mathematical Biosciences and Engineering (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.3934/mbe.2022395

zbMATH Keywords

partial differential equationnext generation sequencing datacell state evolutionhematopoeisisphenotype structured models

Mathematics Subject Classification ID

PDEs in connection with biology, chemistry and other natural sciences (35Q92) Protein sequences, DNA sequences (92D20) Cell biology (92C37)

Related Items (1)

Structured population models on Polish spaces: A unified approach including graphs, Riemannian manifolds and measure spaces to describe dynamics of heterogeneous populations

Uses Software

• ForceAtlas2

Cites Work

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• The generalized cross entropy method, with applications to probability density estimation
• A Structured Population Model of Cell Differentiation
• Geometric diffusions as a tool for harmonic analysis and structure definition of data: Diffusion maps

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