Dynamical modeling and analysis of large cellular regulatory networks

DOI10.1063/1.4809783zbMath1331.37134OpenAlexW2059110753WikidataQ42286354 ScholiaQ42286354MaRDI QIDQ2787874

D. Bérenguier, Claudine Chaouiya, Laurent Tichit, Pedro T. Monteiro, Aurélien Naldi, Elisabeth Remy, Denis Thieffrey

Publication date: 4 March 2016

Published in: Chaos: An Interdisciplinary Journal of Nonlinear Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1063/1.4809783

Mathematics Subject Classification ID

Applications of graph theory (05C90) Dynamical systems in biology (37N25) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Related Items (14)

Stable states of Boolean regulatory networks composed over hexagonal grids ⋮ Overcoming Complexity of Biological Systems: from Data Analysis to Mathematical Modeling ⋮ Reducing Boolean networks with backward Boolean equivalence ⋮ P\(_-\)UNSAT approach of attractor calculation for Boolean gene regulatory networks ⋮ Control of multi-scroll Chen system ⋮ Global dynamics for steep nonlinearities in two dimensions ⋮ Laplacian dynamics with synthesis and degradation ⋮ Controllability of asynchronous Boolean multiplex control networks ⋮ Global dynamics for switching systems and their extensions by linear differential equations ⋮ Dynamics in piecewise linear and continuous models of complex switching networks ⋮ Aggregation of Markov flows I: theory ⋮ Introduction to Focus Issue: Quantitative Approaches to Genetic Networks ⋮ An efficient approach of attractor calculation for large-scale Boolean gene regulatory networks ⋮ Combinatorial Representation of Parameter Space for Switching Networks

Uses Software

• TINA
• Ginsim

Cites Work

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• Distributed Algorithms for SCC Decomposition
• Exploring the Scope for Partial Order Reduction
• The tool TINA – Construction of abstract state spaces for petri nets and time petri nets
• Depth-First Search and Linear Graph Algorithms

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