The Rise of Statistical Phylogenetics

DOI10.1111/anzs.12035zbMath1334.62189OpenAlexW2029523538WikidataQ59680692 ScholiaQ59680692MaRDI QIDQ2802842

Barbara R. Holland

Publication date: 27 April 2016

Published in: Australian & New Zealand Journal of Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/anzs.12035

zbMATH Keywords

maximum likelihoodgoodness-of-fitstochastic modelsphylogenetic treesphylogenetic networksphylogeneticssequence evolutionmolecular phylogenetics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Research exposition (monographs, survey articles) pertaining to statistics (62-02)

Uses Software

• fastDNAml
• RAxML
• MODELTEST

Cites Work

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• Identifiability of large phylogenetic mixture models
• Statistics for phylogenetic trees
• Bootstrap methods: another look at the jackknife
• Links between maximum likelihood and maximum parsimony under a simple model of site substitution
• Phylogenetic invariants for the general Markov model of sequence mutation
• Statistical modeling: The two cultures. (With comments and a rejoinder).
• Markov invariants and the isotropy subgroup of a quartet tree
• Invariants of some probability models used in phylogenetic inference
• Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
• Statistical Inference of Phylogenies

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