A fast algorithm for Brownian dynamics simulation with hydrodynamic interactions

DOI10.1090/S0025-5718-2013-02672-5zbMath1336.76029OpenAlexW1988214780MaRDI QIDQ2840625

Jingfang Huang, Shidong Jiang, Zhi Liang

Publication date: 23 July 2013

Published in: Mathematics of Computation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1090/s0025-5718-2013-02672-5

Mathematics Subject Classification ID

Stochastic analysis applied to problems in fluid mechanics (76M35) Random number generation in numerical analysis (65C10)

Related Items

A hierarchical matrix approach for computing hydrodynamic interactions ⋮ An approximate empirical Bayesian method for large-scale linear-Gaussian inverse problems ⋮ Hierarchical Orthogonal Matrix Generation and Matrix-Vector Multiplications in Rigid Body Simulations ⋮ A Kernel-Independent Treecode for General Rotne-Prager-Yamakawa Tensor ⋮ Revision of DASHMM: Dynamic Adaptive System for Hierarchical Multipole Methods ⋮ A scalable computational platform for particulate Stokes suspensions ⋮ RPYFMM: parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations

Uses Software

• Matlab
• Browndye

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Bounding the spectrum of large Hermitian matrices
• Browndye: A software package for Brownian dynamics
• A kernel-independent adaptive fast multipole algorithm in two and three dimensions
• The black-box fast multipole method
• A fast direct solver for boundary integral equations in two dimensions
• A fast multipole method for the three-dimensional Stokes equations
• Approximating the Logarithm of a Matrix to Specified Accuracy
• An Accelerated Kernel-Independent Fast Multipole Method in One Dimension
• A Chebyshev–Davidson Algorithm for Large Symmetric Eigenproblems
• Fast direct solvers for integral equations in complex three-dimensional domains
• Brownian diffusion of particles with hydrodynamic interaction
• Spectral Methods in MATLAB
• A Generalized Fast Multipole Method for Nonoscillatory Kernels
• A Practical Guide to Pseudospectral Methods
• A fast algorithm for particle simulations