Importance of metabolic coupling for the dynamics of gene expression following a diauxic shift in \textit{Escherichia coli}

DOI10.1016/j.jtbi.2011.11.010zbMath1336.92025OpenAlexW2016337236WikidataQ54347222 ScholiaQ54347222MaRDI QIDQ285158

Delphine Ropers, Valentina Baldazzi, Hidde de Jong, Johannes Geiselmann, Daniel S. Kahn

Publication date: 19 May 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.11.010

zbMATH Keywords

hybrid modelssystems biologymicrobiologymodeling and identification

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40)

Related Items (2)

Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback ⋮ Dynamics of complex feedback architectures in metabolic pathways

Uses Software

• GNA

Cites Work

• Unnamed Item
• Qualitative simulation of the initiation of sporulation in \textit{Bacillus subtilis}
• Qualitative simulation of genetic regulatory networks using piecewise-linear models
• Dynamics in high-dimensional model gene networks
• A methodological basis for description and analysis of systems with complex switch-like interactions
• Comparing different ODE modelling approaches for gene regulatory networks
• The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model
• Modeling the onset of virulence in a pectinolytic bacterium
• Symbolic reachability analysis of genetic regulatory networks using discrete abstractions
• Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach

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