Modelling DNA and RNA secondary structures using matrix insertion-deletion systems

DOI10.1515/AMCS-2016-0017zbMath1336.92062OpenAlexW2309296270MaRDI QIDQ285429

Anand Mahendran, Lakshmanan Kuppusamy

Publication date: 19 May 2016

Published in: International Journal of Applied Mathematics and Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/amcs-2016-0017

zbMATH Keywords

secondary structuresbio-molecular structuresinsertion-deletion systemsintermolecularintramolecular

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (8)

On the computational completeness of graph-controlled insertion-deletion systems with binary sizes ⋮ Investigations on the power of matrix insertion-deletion systems with small sizes ⋮ On the generative capacity of matrix insertion-deletion systems of small sum-norm ⋮ On homomorphic images of the Szilard languages of matrix insertion-deletion systems with matrices of size 2 ⋮ Modeling of RNA secondary structures using two-way quantum finite automata ⋮ Parikh Images of Matrix Ins-Del Systems ⋮ Tabu search for the RNA partial degradation problem ⋮ New models and algorithms for RNA pseudoknot order assignment

Cites Work

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• Matrix insertion-deletion systems
• Insertion languages
• Formal language theory and DNA: An analysis of the generative capacity of specific recombinant behaviors
• Tree adjoining grammars for RNA structure prediction
• Membrane computing. An introduction.
• Multi-Component Tree Insertion Grammars
• Biological Sequence Analysis
• Introduction to evolutionary computing

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