A Stochastic Solver of the Generalized Born Model

DOI10.2478/MLBMB-2013-0003zbMath1278.82072OpenAlexW1964156173MaRDI QIDQ2863925

Robert C. Harris, Marcia O. Fenley, Travis Mackoy

Publication date: 5 December 2013

Published in: Computational and Mathematical Biophysics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.2478/mlbmb-2013-0003

zbMATH Keywords

electrostaticsstochasticPoisson-Boltzmannbindingimplicit solvent modelsolvationgeneralized Born

Mathematics Subject Classification ID

Statistical mechanics of polymers (82D60) Protein sequences, DNA sequences (92D20) Electro- and magnetostatics (78A30) Boltzmann equations (35Q20)

Uses Software

• APBS
• CHARMM
• PDB2PQR

Cites Work

• Unnamed Item
• Monte Carlo methods for solving elliptic equations with boundary conditions containing the normal derivative
• Monte Carlo Methods for Calculating Some Physical Properties of Large Molecules
• Quasirandom Sequences in Branching Random Walks *
• Probabilistic interpretation and random walk on spheres algorithms for the Poisson-Boltzmann equation in molecular dynamics

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