Modelling of Biochemical Reactions by Stochastic Automata Networks

DOI10.1016/j.entcs.2007.05.017zbMath1277.68215OpenAlexW2033164556MaRDI QIDQ2864207

Verena Wolf

Publication date: 6 December 2013

Published in: Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.entcs.2007.05.017

zbMATH Keywords

Markov chainbiochemical reactionsstochastic automata networks

Mathematics Subject Classification ID

Formal languages and automata (68Q45) Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Probability in computer science (algorithm analysis, random structures, phase transitions, etc.) (68Q87)

Related Items (5)

Computational Probability for Systems Biology ⋮ An improved robust delay-dependent stability criterion for genetic regulatory networks with interval time delays ⋮ Stochastic Semantics of Signaling as a Composition of Agent-view Automata ⋮ Teaching Concurrency Concepts to Freshmen ⋮ A Stochastic Automata Network Description for Spatial DNA-Methylation Models

Uses Software

• PEPS
• APNN-Toolbox
• PEPA

Cites Work

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• A stochastic automata network descriptor for Markov chain models of instantaneously coupled intracellular Ca\(^{2+}\) channels
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• Formal molecular biology
• Stochastic approaches for modelling in vivo reactions
• Applications and Theory of Petri Nets 2004
• Transactions on Computational Systems Biology IV

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