Bio-PEPA: An Extension of the Process Algebra PEPA for Biochemical Networks

DOI10.1016/j.entcs.2007.12.008zbMath1279.68254OpenAlexW2038192316MaRDI QIDQ2870300

Jane Hillston, Federica Ciocchetta

Publication date: 17 January 2014

Published in: Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.entcs.2007.12.008

zbMATH Keywords

process algebrassystems biologybiochemical pathways

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Systems biology, networks (92C42) Probability in computer science (algorithm analysis, random structures, phase transitions, etc.) (68Q87)

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Uses Software

• Bio-PEPA
• BIOCHAM
• PEPA

Cites Work

• Modeling biological systems in stochastic concurrent constraint programming
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• BioAmbients: an abstraction for biological compartments
• Computational Methods in Systems Biology

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