Protein Threading: From Mathematical Models to Parallel Implementations

DOI10.1287/ijoc.1040.0092zbMath1239.90011OpenAlexW2031314205MaRDI QIDQ2890440

Stefan Balev, Rumen Andonov, Nicolas Yanev

Publication date: 8 June 2012

Published in: INFORMS Journal on Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1287/ijoc.1040.0092

zbMATH Keywords

linear programminginteger programmingparallel algorithmsnetwork optimizationlarge-scale problemsprotein-threading problem

Mathematics Subject Classification ID

Integer programming (90C10) Deterministic network models in operations research (90B10) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Related Items (5)

Mathematical programming in computational biology: an annotated bibliography ⋮ Local protein threading by mixed integer programming ⋮ Lagrangian approaches for a class of matching problems in computational biology ⋮ Some operations research methods for analyzing protein sequences and structures ⋮ Integer Linear Programming in Computational Biology

Uses Software

• CPLEX
• RAPTOR

This page was built for publication: Protein Threading: From Mathematical Models to Parallel Implementations