BM-Map: Bayesian Mapping of Multireads for Next-Generation Sequencing Data

DOI10.1111/j.1541-0420.2011.01605.xzbMath1266.92049OpenAlexW2055335889WikidataQ33881427 ScholiaQ33881427MaRDI QIDQ2893378

Shoudan Liang, Kam-Wah Tsui, Yanxun Xu, Clift Jun. Norris, Yuan Ji, Han Liang, Yuan Yuan, Qiong Zhang

Publication date: 20 June 2012

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3190637

zbMATH Keywords

data augmentationtranscriptomeRNA-seqread alignmentshort readssolexa sequencing

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08) Software, source code, etc. for problems pertaining to biology (92-04)

Related Items (1)

A Bayesian feature allocation model for tumor heterogeneity

Uses Software

• Soap
• BM-map

Cites Work

• Methods for allocating ambiguous short-reads
• Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data
• The Calculation of Posterior Distributions by Data Augmentation

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