A MAX-plus model of ribosome dynamics during mRNA translation

DOI10.1016/j.jtbi.2012.03.007zbMath1337.92053arXiv1105.3580OpenAlexW2008518517WikidataQ51396341 ScholiaQ51396341MaRDI QIDQ289493

David S. Broomhead, Marco Thiel, Chris A. Brackley, M. Carmen Romano

Publication date: 30 May 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1105.3580

zbMATH Keywords

Petri netelongationtropical algebraprotein biosynthesis

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Max-plus and related algebras (15A80)

Related Items (9)

On tropical supereigenvectors ⋮ Permutability of matrices over bipotent semirings ⋮ On integer eigenvectors and subeigenvectors in the max-plus algebra ⋮ On integer images of max-plus linear mappings ⋮ A note on tropical linear and integer programs ⋮ Computation of the transient in max-plus linear systems via SMT-solving ⋮ Max-plus linear inverse problems: 2-norm regression and system identification of max-plus linear dynamical systems with Gaussian noise ⋮ Basic, simple and extendable kinetic model of protein synthesis ⋮ \texttt{VeriSIMPL 2}: an open-source software for the verification of max-plus-linear systems

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• Max-linear Systems: Theory and Algorithms
• Products of Irreducible Random Matrices in the (Max, +) Algebra
• Local inhomogeneity in asymmetric simple exclusion processes with extended objects
• Modeling and analysis of timed Petri nets using heaps of pieces

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