A Context Dependent Pair Hidden Markov Model for Statistical Alignment

DOI10.2202/1544-6115.1733zbMath1296.92014arXiv1107.2798OpenAlexW2964324547WikidataQ46113170 ScholiaQ46113170MaRDI QIDQ2921246

Catherine Matias, Ana Arribas-Gil

Publication date: 8 October 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1107.2798

zbMATH Keywords

EM algorithmstatistical alignmentcomparative genomicssequence evolutioncontextual alignmentDNA sequence alignmentinsertion deletion modelpair hidden Markov modelprobabilistic alignmentstochastic expectation maximization algorithm

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)

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