Computing Posterior Probabilities for Score-based Alignments Using ppALIGN

DOI10.1515/1544-6115.1702zbMath1296.92192OpenAlexW2229749168WikidataQ34281304 ScholiaQ34281304MaRDI QIDQ2922545

Stefan Wolfsheimer, Ralf Rabus, Gregory Nuel, Alexander K. Hartmann

Publication date: 13 October 2014

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/1544-6115.1702

zbMATH Keywords

posterior distributionBLASTlocal scoreforward/ backwardglobal scorepair-HMM

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (1)

Duality between the local score of one sequence and constrained hidden Markov model

Uses Software

• ppALIGN
• CLUSTAL
• Clustal X
• Statalign
• HMMoC
• Rose
• Bali-phy

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