A method to distinguish between lysine acetylation and lysine methylation from protein sequences

DOI10.1016/j.jtbi.2012.06.030zbMath1337.92162OpenAlexW1982136724WikidataQ44619348 ScholiaQ44619348MaRDI QIDQ292799

Jian-Ding Qiu, Shao-Ping Shi, Ru-Ping Liang, Xing-Yu Sun, Sheng-Bao Suo, Shu-Yun Huang

Publication date: 9 June 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2012.06.030

zbMATH Keywords

aacetyl-lysineencoding based on grouped weightmethyl-lysineposition weight amino acid compositionsecondary structure

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items

Efficacy of function specific 3D-motifs in enzyme classification according to their EC-numbers, A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition, Predicting protein-protein interactions by fusing various Chou's pseudo components and using wavelet denoising approach

Uses Software

• LIBSVM
• Cell-PLoc
• Cd-hit
• WebLogo
• PSI-BLAST
• BLAST
• EnsemblePail
• QuickGO
• PLMLA

Cites Work

• Use of fuzzy clustering technique and matrices to classify amino acids and its impact to Chou's pseudo amino acid composition
• Some remarks on protein attribute prediction and pseudo amino acid composition
• Lysine acetylation sites prediction using an ensemble of support vector machine classifiers
• The modified Mahalanobis discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
• Unnamed Item