PSAEC: An Improved Algorithm for Short Read Error Correction Using Partial Suffix Arrays

DOI10.1007/978-3-642-21204-8_25zbMath1329.68317OpenAlexW114037093MaRDI QIDQ3004672

Zhiheng Zhao, Jianping Yin, Yubin Zhan, Wei Xiong, Fayao Liu, Yong Li

Publication date: 3 June 2011

Published in: Frontiers in Algorithmics and Algorithmic Aspects in Information and Management (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-21204-8_25

zbMATH Keywords

parallelerror correctionsuffix arrayhigh-throughput sequencing

Mathematics Subject Classification ID

Parallel algorithms in computer science (68W10) Genetics and epigenetics (92D10) Algorithms on strings (68W32)

Uses Software

• ALLPATHS
• Quake
• HiTEC
• Reptile
• SHREC

Cites Work

• Unnamed Item
• Faster suffix sorting
• Suffix Arrays: A New Method for On-Line String Searches

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