Simulating Biochemical Signaling Networks in Complex Moving Geometries

DOI10.1137/090779693zbMath1214.92016OpenAlexW2046313315WikidataQ42964178 ScholiaQ42964178MaRDI QIDQ3006151

Wanda Strychalski, David Adalsteinsson, Timothy C. Elston

Publication date: 10 June 2011

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3786195

zbMATH Keywords

level set methodssystems biologyadvection-reaction-diffusion equation

Mathematics Subject Classification ID

Probabilistic models, generic numerical methods in probability and statistics (65C20) Reaction-diffusion equations (35K57) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Biochemistry, molecular biology (92C40) Cell biology (92C37) Systems biology, networks (92C42) Finite volume methods for initial value and initial-boundary value problems involving PDEs (65M08)

Related Items (5)

Free boundary problem for cell protrusion formations: theoretical and numerical aspects ⋮ Deterministic versus stochastic cell polarisation through wave-pinning ⋮ A moving grid finite element method applied to a mechanobiochemical model for 3D cell migration ⋮ A computational method for the coupled solution of reaction-diffusion equations on evolving domains and manifolds: application to a model of cell migration and chemotaxis ⋮ A Conservative Finite Element ALE Scheme for Mass-Conservative Reaction-Diffusion Equations on Evolving Two-Dimensional Domains

Uses Software

• ITSOL
• SPARSKIT

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