Characterizing local optima for maximum parsimony

DOI10.1007/s11538-016-0174-0zbMath1348.92116OpenAlexW2406979549WikidataQ36032835 ScholiaQ36032835MaRDI QIDQ309903

Ellen Urheim, Katherine St. John, Eric B. Ford

Publication date: 7 September 2016

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-016-0174-0

zbMATH Keywords

compatibilitymaximum parsimonyattraction basinsphylogenetic islandstree searching

Mathematics Subject Classification ID

Problems related to evolution (92D15)

Related Items (1)

Heading in the right direction? Using head moves to traverse phylogenetic network space

Uses Software

• RAxML
• PAUP*
• TNT

Cites Work

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• Branch and bound algorithms to determine minimal evolutionary trees
• The Steiner problem in phylogeny is NP-complete
• Taxonomy with confidence
• Retractions of finite distance functions onto tree metrics
• Landscapes on spaces of trees
• Efficiency of Local Search with Multiple Local Optima
• Efficient algorithms for inverting evolution
• Comparison of labeled trees with valency three
• Subtree transfer operations and their induced metrics on evolutionary trees

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