Simulation, Characterization, and Optimization of Metabolic Models with the High Performance Systems Biology Toolkit

DOI10.1137/110822402zbMath1231.92037OpenAlexW2046281512MaRDI QIDQ3116498

Monte Lunacek, Peter A. Graf, David M. Alber, Kenny Gruchalla, Christopher H. Chang, Ambarish Nag

Publication date: 23 February 2012

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/110822402

zbMATH Keywords

ordinary differential equationsparameter identificationsystems biologysimulation optimizationmetabolic modeling

Mathematics Subject Classification ID

Sensitivity, stability, parametric optimization (90C31) Parallel numerical computation (65Y05) Numerical methods for initial value problems involving ordinary differential equations (65L05) Inverse problems involving ordinary differential equations (34A55) Control/observation systems governed by ordinary differential equations (93C15) Systems biology, networks (92C42) Numerical methods for stiff equations (65L04)

Related Items (1)

HiPer SBTK

Uses Software

• ADOL-C
• PHCpack
• CVODES
• DAKOTA
• OPT++
• libSBML

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