Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping

DOI10.1214/15-AOAS871zbMath1400.62284OpenAlexW2505916695MaRDI QIDQ312910

Sean Ruddy, Marla Johnson, Elizabeth Purdom

Publication date: 9 September 2016

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://projecteuclid.org/euclid.aoas/1469199890

zbMATH Keywords

empirical Bayesalternative splicingdispersion estimationmRNA-Seqover-dispersed binomial

Mathematics Subject Classification ID

Ridge regression; shrinkage estimators (Lasso) (62J07) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20) Empirical decision procedures; empirical Bayes procedures (62C12)

Related Items (1)

Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping

Uses Software

• R
• Bioconductor
• CRAN
• gcrma
• edgeR
• BaySeq
• DEseq
• limma
• Voom
• DoubleExpSeq
• DiffSplice
• TopHat
• EBSeq
• MOABS
• rSeqDiff
• SpliceTrap

Cites Work

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• Extra-Binomial Variation in Logistic Linear Models
• Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
• Statistical modeling of RNA-Seq data
• Small-sample estimation of negative binomial dispersion, with applications to SAGE data
• Double Exponential Families and Their Use in Generalized Linear Regression
• Approximating bayesian inference by weighted likelihood

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