Bioinformatics for High Throughput Sequencing

DOI10.1007/978-1-4614-0782-9zbMath1297.92005OpenAlexW1531668109WikidataQ58634147 ScholiaQ58634147MaRDI QIDQ3191914

No author found.

Publication date: 25 September 2014

Full work available at URL: https://doi.org/10.1007/978-1-4614-0782-9

zbMATH Keywords

sequencing data

Mathematics Subject Classification ID

Collections of articles of miscellaneous specific interest (00B15) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Proceedings, conferences, collections, etc. pertaining to biology (92-06) Computational methods for problems pertaining to biology (92-08)

Uses Software

• Rfam
• ALLPATHS
• edgeR
• ARACHNE
• DEGseq
• FatiGO
• KEGG
• miRBase
• BLAT
• eggNOG
• Velvet
• SHRiMP
• ROAST
• ABySS
• BayesPeak
• starBase
• BS Seeker
• BSMAP
• VarScan
• HMMSplicer
• SNVMix
• BayesCall
• BING
• QSRA
• SHARCGS
• mrsFAST
• FindPeaks
• HPeak
• MiRFinder
• DIANA-mirExTra
• miRanalyzer
• MiPred
• MiRonTop
• ProMiR II
• SeqBuster
• PatMaN
• miRNAkey
• TargetSpy
• miRExpress
• mirTools
• CLIPZ
• DWE
• SpliceTrap

Cites Work

• ARACHNE
• Velvet

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