De Novo NGS Data Compression

DOI10.1007/978-3-319-59826-0_4zbMath1457.68086OpenAlexW2755899288MaRDI QIDQ3305522

Guillaume Rizk, Gaetan Benoit, Erwan Drezen, Dominique Lavenier, Claire Lemaitre

Publication date: 7 August 2020

Published in: Algorithms for Next-Generation Sequencing Data (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-59826-0_4

Mathematics Subject Classification ID

Coding and information theory (compaction, compression, models of communication, encoding schemes, etc.) (aspects in computer science) (68P30) Genetics and epigenetics (92D10)

Uses Software

• Samtools
• SCALCE
• BWA

Cites Work

• Unnamed Item
• A universal algorithm for sequential data compression
• A Method for the Construction of Minimum-Redundancy Codes

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