Error Correction in Methylation Profiling From NGS Bisulfite Protocols

DOI10.1007/978-3-319-59826-0_8zbMath1460.92154OpenAlexW2755612007MaRDI QIDQ3305529

Guillermo Barturen, Jose L. Oliver, Michael Hackenberg

Publication date: 7 August 2020

Published in: Algorithms for Next-Generation Sequencing Data (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-59826-0_8

zbMATH Keywords

bisulfite conversionmethylation contextsmethylation levelsoriginal methylation statuswhole-genome bisulfite sequencing (WGBS)

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Uses Software

• GATK
• Samtools
• FastQC
• FASTX
• Trimmomatic
• Cutadapt
• BS Seeker
• BSmooth
• Bismark
• BSMAP
• VarScan
• Bowtie 2
• mrsFAST
• MethylCoder

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