Recurring patterns among scrambled genes in the encrypted genome of the ciliate \textit{Oxytricha trifallax}

DOI10.1016/j.jtbi.2016.08.038zbMath1348.92117OpenAlexW2512483834WikidataQ39424187 ScholiaQ39424187MaRDI QIDQ332436

Jonathan Burns, Xiao Chen, Laura F. Landweber, Nataša Jonoska, Denys Kukushkin, Masahico Saito

Publication date: 8 November 2016

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2016.08.038

zbMATH Keywords

genome rearrangementDNA inversionhomologous recombinationscrambled genestranslocation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (2)

Graph based analysis for gene segment organization in a scrambled genome ⋮ Symbol Separation in Double Occurrence Words

Cites Work

• Unnamed Item
• Rewriting rule chains modeling DNA rearrangement pathways
• DNA recombination through assembly graphs
• Gene assembly through cyclic graph decomposition
• Computation in living cells. Gene assembly in ciliates
• Template-guided recombination for IES elimination and unscrambling of genes in stichotrichous ciliates
• RNA-guided DNA assembly
• Reductions on Double Occurrence Words

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