Simulating nanoscale functional motions of biomolecules

DOI10.1080/08927020600771415zbMath1109.92006OpenAlexW2326953139MaRDI QIDQ3437373

Zhi Yong Zhang, Mili I. Shah, Willy Wriggers, Danny C. Sorensen

Publication date: 9 May 2007

Published in: Molecular Simulation (Search for Journal in Brave)

Full work available at URL: http://hdl.handle.net/1911/102050

zbMATH Keywords

singular value decompositionprincipal component analysismolecular dynamicsnormal modessymmetry constraintslocal feature analysis

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Biophysics (92C05) Computational methods for problems pertaining to biology (92-08)

Uses Software

• ARPACK

Cites Work

• Unnamed Item
• Derivation and testing of explicit equations of motion for polymers described by internal coordinates
• ARPACK Users' Guide
• Molecular dynamics by the Backward‐Euler method

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